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> Research & Publications > Research Papers
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Dr. Seema Dwivedi |
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Publications |
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• Dwivedi, S. (2010): Ecological study of Micro flora in Assessment of pollution Level of river Water (Accepted in ICEAE 2010, Kyoto, Japan, 1-3 August, 2010 Paper code ID : RO79).
• Dwivedi, S. (2010): Polynomial regression model for COD-BOD of waste effluent water quality, (Communicated).
• Dwivedi, S. (2010): Pollution induced structural and Physico-Chemical changes in Algal Community: A Case Study of River Pandu of North India. (Accepted in ICESSE 2010, Venice, Italy, 24-26 November, 2010 paper code ID : FR 72000).
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Dr. Bhupendra Chaudhary |
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Publications |
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• Rawat, P., Singh, A.K., Ray, K., Chaudhary, B., Kumar, S., Gautam, T., Kanoria, S., Kaur, G., Kumar, P., Pental, D. and Burma, P.K. (2011). Detrimental effect of expression of Bt endotoxin Cry1Ac on in vitro regeneration, in vivo growth and development of tobacco and cotton transgenics. Journal of Biosciences 36(2): 363–376
• Chaudhary, B., Hovav, R., Flagel, L., Mittler, R. and Wendel, J.F. (2009). Parallel
evolution of oxidative stress-related genes in fiber from wild and domesticated
diploid and polyploid cotton (Gossypium). BMC Genomics 10:378
• Chaudhary,B., Flagel, L., Stupar M. R., Udall, J.A., Verma, N., Springer, N.M.
and Wendel, J.F. (2009). Reciprocal silencing, transcriptional bias and functional
divergence of homoeologs in polyploid cotton (Gossypium). Genetics 182:503-517
• Flagel L., Liping C., Chaudhary B. and Wendel J.F. (2009). Coordinated and fine-scale
control of homoeologous gene expression in allotetraploid cotton. Journal of Heridity
100(4):487-490
• Chaudhary, B., Hovav, R., Rapp, R., Verma, N., Udall, J.A. and Wendel, J.F. (2008).
Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium
barbadense. Evolution and Development 10(5):567-582
• (equal contribution) Hovav, R., Chaudhary, B., Udall, J.A., Flagel, L. and Wendel,
J.F. (2008). Parallel domestication, convergent evolution and duplicated gene recruitment
in allopolyploid cotton. Genetics 179:1725-1733
• Hovav, R., Udall, J. A., Chaudhary, B., Rapp,R., Flagel, L. and Wendel, J.F. (2008).
Partitioned expression of duplicated genes during development and evolution of a
single cell in a polyploid plant. Proc. Natl. Acad. Sci. USA 105:6191-6195
• Hovav, R., Udall, J. A., Chaudhary, B., Hovav, E., Flagel, L., Hu, G. and Wendel,
J. F. (2008). The evolution of spinable cotton fiber entailed natural selection
for prolonged development and a novel metabolism. PLoS Genetics 7:e25
• Chaudhary B. (2006). Proteomics: Basic Concepts and Application. In Biodiversity
and Biotechnology (eds.) S. Ray and A.K. Ray, New Central Book Agency (P) Ltd, Kolkatta,
India, 254-264
• Kumar S., Birah A., Chaudhary B., Burma P.K., Gupta G.P. and Pental D. (2005).
Plant codon optimized cry genes of Bacillus thuringiensis can be expressed as soluble
proteins in E. coli BL21 Codon Plus strain as NusA-Cry protein fusions. Journal
Invertebrate Pathology 88: 83-86
• Chaudhary B., Kumar S., Prasad K.V.S.K., Oinam G.S., Burma P.K. and Pental D.
(2003). Slow desiccation leads to high frequency shoot recovery from transformed
somatic embryos of cotton (Gossypium hirsutum L. cv. Coker 310 FR). Plant Cell Reports
21: 955-960
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Dr. Gunjan Garg |
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Publications |
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• Garg, G. (2010) “Growth and physiological responses of Catharanthus roseus (L.)
shoot cultures to salinity stress”. International conference of Environmental Sciences
and Development (CESD), Singapore, February 26-28, 2010. [Accepted Paper ID = A096].
Proceeding published by World Academic Press and indexing in Thomsom ISI, Nielsen
and British Library
• Garg, G and Kataria, S.K (2009) “Phytoremediation potential of Raphanus sativus,
Brassica juncea and Triticum aestivum for copper contaminated soil. E-Proceedings
of International Society of System Sciences, University of Queensland, Brisbane
(Australia), July 12-17, 2009.
• Garg, G. (2009) “Differential Responses in Germination and Seedling Growth in
Two Varieties of Phaseolus mungo under Salt and Drought Stresses” (accepted: J.
Environmental Biology, vol.31 (2/3)10).
•Khawale, S. K. Singh, G. Garg (2006) “Agro-bacterium mediated transformation in
citrus sp.” Current Science Vol. 91(12).
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Dr. Jai Prakash Muyal |
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Publications |
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• Carola Seifart*, Jai Prakash Muyal*, Alexandra Plagens, Ali Önder Yildirim, Sabine Sandu,
Thomas Tschernig, Claus Vogelmeier, Heinz Fehrenbach. All-trans retinoic acid fails to inhibit
inflammatory shift macrophages resulting in distorted lung septa. *equal contribution. Under revision
in European Respiratory Journal
• Jai Prakash Muyal, Vandana Muyal, Brajesh Pratap Kaistha, Carola Seifart, and
Heinz Fehrenbach. Systematic Comparison of RNA Extraction Techniques from Frozen
and Fresh Lung Tissues: Checkpoint towards Gene Expression Studies. Diagn Pathol.
2009 Mar 24;4(1):9. PMID 19317905
• Jai Prakash Muyal, Shiv Kumar Singh, & Heinz Fehrenbach. DNA-Microarray Technology:
Impact of Methods Optimization Generated a Reliable Platform for the Gene Expression
Profiling. Crit Rev Biotechnol. 2008;28(4):239-5. PMID: 19051103
• Jochen Wilhelm, Jai Prakash Muyal, Johannes Best, Grazyna Kwapiszewska, Maria
Magdalena Stein 1, Werner Seeger, Rainer Maria Bohle, and Ludger Fink. “Systematic
comparison of the T&-IVT and SMART™ based RNA preamplification techniques for
DNA-microarray experiments”- Clin Chem. 2006 Jun 52(6): 1161-7. PMID: 16627562
• Pullamsetti S, Kiss L, Ghofrani HA, Voswinckel R, Haredza P, Walter Klepetko,
Aigner C, Fink L, Muyal JP, Weissmann N, Grimminger F, Seeger W, and Schermuly RT.
“Increased levels and reduced catabolism of asymmetric and symmetric dimethylarginices
in pulmonary hypertension” – FASEB J. 2005 Jul 19(9): 1175-7. PMID: 15827267
• Ludger Fink, Hans Hölschermann, Grazyna Kwapiszewaska, Jai Prakash Muyal, Björn
Lengemann, Rainer Maria Bohle, Santot Santoso. “Characterization of platelet-specific
mRNA by real-time PCR after laser-assisted microdissection”- Thromb Haemost. 2003
Oct 90(4):749-56. PMID: 14515198
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Dr. Shakti Sahi |
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Publications |
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• In Silico Identification of Antioxidant gene G6PD in Caenorhabditiselegans Jitendra
N, Prachi S, Alpana V, Shakti S (2007) 8 (1) : 61-74, 2007 Online Journal of Bioinformatics,
Australia
• Oxygenation by cyclooxygenase-2 (COX-2) of 3-Hydroxyeicosa-tertraenoic acid (3-HETE),
a fungal mimetic of arachidonic acid, produces a cascade of novel bioactive 3-hydroxyeicosanoids
Roberto Ciccoli, Shakti Sahi, Sandhya Singh, Hridayesh Prakash, Maria-Patapia Zafiriou,
Ganchimeg Ishdorj, Johan L.F. Kock, Santosh Nigam (2005) Biochem J. Sep 15;390(Pt
3):737-47
• Kothekar, V. and Sahi, S (2002) “Design of peptides and peptidomimetics as COX-2
selective inhibitors” J.Molecular Structure (Theochem),577,107-120.
• Kothekar, V., Sahi, S., Srinivasan, M., Mohan, A. and Mishra J. (2001) “ Recognition
of cyclooxygenase-2 (COX-2) active site by NSAIDs: a computer modelling study” Indian
J.Biochemistry and Biophysics, 38, 56-63 .
• Kothekar, V., Sahi, S and Mishra, J (2001),” Molecular dynamics simulation of
interaction of 5 keto substituted 7 tert Butyl 2,3 dihydrp, 3,3 dinethyl furan derivatives
with cyclooxygenase -2”, Current Science, 80, 764-769.
• Kothekar,V., Sahi, Shakti and Mishra Jyoti (2000) "Enzyme selectivity of new cyclooxygenase
–2/5 lipoxygenase inhibitors using molecular modeling approach”, Indian J.Biochemistry
and Biophysics, 37, 86-96
• Kothekar, V., S. Sahi and M.Srinivasan (1999)"Computer Simulation of the interaction
of non-steroidal anti-inflammatory drugs:Indoprofen and NS398 with cyclooxygenase"
, J. Biomolecular Structure & Dynamics 16,4,901-915.
• Sahi, Shakti, Srinivasan,M. and Kothekar, V (1999) , " 530 ps Molecular dynamics
simulation of NSAIDs with COX-1 and COX-2. Study of purturbative changes", J.Molecular
structure (Theochem) 498, 133-138.
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Dr. Nagendra Singh |
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Publications |
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• Singh, A.K., Singh, N., Sinha, M., Sharma, S., Kaur, P., Srinivasan, A. and Singh,
T.P. (2010). First structural evidence of mode of diffusion of aromatic ligands and
ligand induced closure of hydrophobic tunnel in heme peroxidases. J. Bio. Inorg.
Chem. (in press)
• Mir, R., Singh, N., Kumar R.P., Gopalakrishana pillai, V., Sinha, M., Bhushan, A.,
Kaur, P., Srinivasan, A., Sharma, S. and Singh, T.P. (2010). Sequesteration of edible
sugars by the C-terminal lobe of lactoferrin protein: Binding and structural studies
with implications on diabetes. Int. J. Biol. Macromol. (in press)
• Singh, N., Singh, A.K., Sinha, M., Sharma, S., Kaur, P., Srinivasan, A. and Singh,
T.P. (2009). Mode of ligand-binding and assignment of subsites in mammalian
peroxidase: Crystal structures of complex of lactoperoxidase with acetylsalicylic acid,
selicylhydroxamic acid and benzylhydroxamic acid. J. Biol. Chem. 284, 20311-
20318.
• Singh, A.K., Kumar, R.P., Pandey, N., Singh, N., Sinha, M., Kaur, P., Sharma, S.
and Singh, T.P. (2010). Mode of the binding of the tuberculosis prodrug isoniazid to
peroxidases: Crystal structure of bovine lactoperoxidase with isoniazid at 2.7Å
resolution. J. Biol. Chem. 285, 1569-1576.
• Mir, R., Singh, N., Gopalakrishana pillai, V., Kumar R.P., Sinha, M., Bhushan, A.,
Kaur, P., Srinivasan, A., Sharma, S. and Singh, T.P. (2009) Structural Basis of the
Prevention of NSAID- Induced Damage of the Gastrointestinal Tract by C-Terminal
Half (C-lobe) of Bovine Colostrum Protein Lactoferrin : Binding and Structural
Studies of C-lobe Complexes with Indomethacin, Diclofenac, Aspirin and Ibuprofen.
Biophysical J. 97, 3178-3186. (Journal cover page)
• Singh N., Prem Kumar, R., Kumar, S., Sharma S., Mir, R., Kaur, P., Srinivasan, A.
and Singh T.P. (2009). Simultaneous inhibition of anti-coagulation and inflammation:
Crystal structure of phospholipase A2 complexed with indomethacin at 1.4Å
resolution reveals the presence of the new common ligand binding site. J. Mol.
Recognit. 22, 437-445.
• Kumar, S., Singh, N., Sinha. M, Dube, D., Kaur, P., Srinivasan, A., Sharma, S. and
Singh, T.P. (2010). Structural characterization and binding studies of a plantpathogenesis
related protein, Haemanthin from Haemanthus multiflorus reveals its
dual role of inhibiting amylase and xylanase. FEBS J. (in press).
• Kumar, S., Singh, N., Sinha. M, Sharma, S, Kaur, P., Srinivasan, A. And Singh, T.P.
(2009). Isolation, purification, crystallization and preliminary crystallographic studies
of a plant-pathogenesis related protein, amaryllin from amaryllis belladonna. Acta
Crystallogr. F65, 635-637.
• Sheikh, I.A., Singh, A.K., Singh, N., Sinha, M., Sharma, S., Kaur, P., Srinivasan, A.
and Singh, T.P. (2009). Structural evidence of substrate-specificity in mammalian
peroxidase: Crystal structure of the complex of lactoperoxidase with thiocyanate at
2.4 Å resolution. J. Biol. Chem. 284, 14849-14856.
• Mishra, P., Prem Kumar, R., Ethayathulla, A., Singh, N., Sharma, S., Perbendt, M.,
Betzel, C., Kaur, P., Srinivasan, A., Bhakuni, V. and Singh, T.P. (2009). Crystal
structure of a phage encoded hyaluronate lyase and its complexes with lactose and
ascorbic acid reveals the substrate-binding channel. FEBS J. 276, 3392-3402.
(Journal cover page)
• Kumar, V., Roske, Y., Singh, N, Heinemann, U., Singh, T. P. and Yadav, S. (2009).
Purification and X-ray crystallographic preliminary studies of b-microsemino protein
from human seminal plasma. Acta Crystallogr. F65, 518-521.
• Sharma, P., Singh, N., Sinha, M. Sharma, S., Perbendt, M., Betzel, C., Kaur, P.,
Srinivasan, A. and Singh, T.P. (2009). Tryptophan as a three-way switch in
regulating the function of the secretory signalling glycoprotein (SPS-40) from
mammary glands: crystal structure of SPS-40 complexed with 2-methyl-pentane-2,4
diol at 1.6 Å resolution. Acta Crystallogr. D65. 375-378.
• Singh, A. K., Singh, N., Sharma, S. and Singh T. P. (2009). Inhibition of peroxidase
by its catalytic product: Crystal structure of the hypothiocyanate-inhibited
lactoperoxidase at 2.3Å resolution. Biophysical. J., 96, 646-654.
• KSharma, P., Singh, N., Sinha, M. Sharma, S., Perbendt, M., Betzel, C., Kaur, P.,
Srinivasan, A. and Singh, T.P. (2008).Crystal structure of the peptidoglycan
recognition protein at 1.8Å resolution reveals dual strategy to combat infection
through two independent functional homodimers. J. Mol. Biol. 378, 921-930.
• Singh, A. K., Singh, N., Sharma, S., Singh, S.B., Kaur, A, Srinivasan, A. and Singh
T. P. (2008). Crystal structure of goat lactoperoxidase at 2.4Å resolution. J. Mol.
Biol. 376. 1060-1075.
• Mir, R. Sinha, M., Sharma, S., Singh, N., Kaur, P., Srinivasan, A and Singh, T. P.
(2008). Isolation, purification, crystallization and preliminary crystallographic studies
of sagitoxin, an oligomeric cardiotoxin fron naja naja saggitifera. Acta Crystallogr.
F64, 545-547.
• Hasan, M.I., Kumar, V., Singh, N., Yadav, S., Kaur, P and Singh, T. P. (2008).
Crystal structure of the novel complex formed between Zinc a2-glycoprotein (ZAG)
and Prolactin inducible protein (PIP) from human seminal plasma. J. Mol. Biol. 384,
663-672.
• Jain, R., Sharma, P., Singh, N., Sharma, S., Kaur, P. and Singh, T. P. (2008).
Crystal Structure of the Complex of Cameline Peptidoglycan Recognition Protein
with Disaccharide at 3.2Å Resolution. Biophysical Journal 94: 3256.
• Sharma, P., Singh, N., Sinha, M., Sharma, S., Perbendt, M., Betzel, Ch., Kaur, P.,
Srinivasan , A. and Singh, T. P. (2008). Crystal Structure of Peptidoglycan
Recognition Protein at 1.8Å Resolution. Acta Cryst. A64, C314
• Singh N., Somvanshi, R. K.., Sharma S., Kaur, P. and Singh T.P. (2007). Structural
Elements of Ligand Recognition Site in Secretory Phospholipase A2 and Structure-
Based Design of Specific Inhibitors. Cur. Topics Med. Chem. 7, 757-764.
• Kumar, J., Ethayathulla, A. S., Srivastava, D. B., Singh, N., Sharma, S., Kaur, P.
and Singh, T. P. (2007). Carbohydrate Binding Properties of Goat Secretory
Glycoprotein (SPG-40) and its Functional Implications: Crystal Structures of the Native Glycoprotein and its Four Complexes with Chitin - Like Oligosaccharides.
Acta Crystallogr. D63, 437-446.
• Singh N., Jabeen T., Pal, A., Sharma S., Betzel Ch. and Singh T. P. (2006).
Regulation of phospholipase A2 activity by plant originated compounds: Crystal
structures of the complexes of phospholipase A2 with anisic acid and atropine at 1.3
and 1.2 Å resolution respectively. Proteins: Struct. Funct. Bioinformatics 64, 89-
100.
• Singh N., Jabeen T., Sharma S. and Singh T. P. (2006). Phospholipase A2 is a
target molecule for the action of non-steroidal anti-inflammatory drugs: Crystal
structure of the complex of phospholipase A2 with diclofenac drugs at 2.7 Å
resolution. Acta Crystallogr. D62, 410-416.
• Jabeen, T., Singh, N., Sharma, S., Singh, R.K., Jasti, J., Kaur, P., Srinivasan, A.
and Singh T.P. (2006). Crystal structure of a C49 phospholipase A2 from Indian
cobra reveals carbohydrate binding in the hydrophobic channel. Proteins: Struct.
Funct. Bioinformatics 62, 329-337.
• Sharma M., Ethayathulla A. S., Jabeen T., Singh, N., Sarvanan K., Yadav S.,
Sharma S., Srinivasan A. and Singh, T. P. (2006). Crystal structure of a highly acidic
neurotoxin from scorpion buthus tamulus at 2.2 Å resolution reveals novel structural
features. J. Struct. Biol. 155, 52-62.
• Srivastava, D. B.., Ethayathulla, A. S., Kumar, J., Singh, N., Sarvanan K., Sharma
S., Srinivasan A. and Singh, T. P. (2006). Crystal structure of signalling protein
(SPS-40) from sheep. J. Struct. Biol. 156, 505-516.
• Singh N., Jabeen T., Bilgrami S., Sharma S., Roy I., Gupta M.N., Somvanshi, R.,
Dey, S. , Srinivasan, A. and Singh T.P. (2005). Detection of native peptides as
potent inhibitors of enzymes: Crystal structure of the complex formed between the
treated bovine a-chymotrypsin and an autocatalytically produced fragment Ile-Val-
Asn-Gly-Glu-Glu-Ala-Val-Pro-Gly-Ser-Trp-Pro-Trp at 2.2 Å resolution. FEBS J. 272,
562-572.
• Jabeen, T. Sharma, S., Singh, N., Singh, R.K., Kaur P. and Singh T.P. (2005).
Crystal Structure of a calcium dimer phospholipase A2 from venom of Naja naja
sagittifera at 1.6Å resolution. Proteins: Struct. Funct. Bioinformatics 59, 856-863.
• Jabeen T., Sharma, S., Singh N., Singh, R.K. and Singh T.P. (2005). Crystal
structure of a zinc-induced cobra venom phospholipase A2 dimer at 2.7Å resolution.
Acta Crystallogr. D61, 302-308.
• Jabeen, T., Sharma, S., Singh, N., Bhusan, A. and Singh T. P. (2005). Structure of
the zinc-saturated C-terminal lobe of bovine lactoferrin at 2.0 A resolution. Acta
Crystallogr. D61, 1107-1115 (Journal Cover page).
• Singh R.K., Singh N., Jabeen T., Sharma S., Dey S. and Singh T.P. (2005). Crystal
structure of the complex of group I PLA2 with a group II-specific peptide Leu-Ala-Ile-
Tyr-Ser (LAIYS) at 2.6 Å resolution. J. Drug Target. 13, 367-374.
• Jabeen T., Singh N., Sharma, S., Singh, R.K. and Singh T.P. (2005). Crystal
structure of the complex formed between cobra venom phospholipase A2 and a nonsteroidal
anti-inflammatory drug, niflumic acid at 2.5 Å resolution. Acta Crystallogr.
D61, 1579-1586.
• Jain R., Kumar S., Singh N., Sharma S. and Singh T.P. (2005). Characterization of
proteins from human pleural fluid. Eur. Biophys. J. 34, 825.
• Srivastava D.B., Kumar J., Srivastava P., Mandal A., Jain R., Jabeen T., Singh N.,
Sharma S., Srinivasan A. and Singh T.P. (2005). Clinical Proteomics:
characterization and structural studies of new proteins from human body fluids and
tissues. Eur. Biophys. J. 34, 773.
• Jabeen, T., Singh, N., Sharma, S., Srinivasan, A. and Singh T. P. (2005). Crystal
structure of a novel phospholipase A2 from Naja naja sagittifera with a strong
anticoagulant activity. Toxicon 46, 865-875.
• JSingh, N., Sarvanan, K., Paramasivam, M., Sharma, S., Srinivasan, A. and Singh T.
P. (2005). Purification and partial characterization of neurotoxins from Indian
red scorpion venom and cloning of toxin cDNAs. Ind. J. Phys. 6, 77-86.
• Singh N., Jabeen T., Sharma S., Somvanshi, Rishi, Dey, S. and Singh T.P. (2004).
Phospholipase A2 is a target for action of non-steroidal anti-inflammatory drugs
(NSAIDs): Crystal structure of the complex formed between Russell’s viper PLA2 and
an anti-inflammatory agent oxyphenbutazone at 1.6Å resolution. Biochemistry 43,
14577-14583.
• Sharma A. K., Kumar S., Sharma V., Nagpal A., Singh N., Tamboli I., Mani I.,
Raman G., Singh T. P. (2001). Lactoferrin-melanin interaction and its possible
implications in melanin polymerization: Crystal structure of the complex formed
between mare lactoferrin and melanin monomers at 2.7Å resolution. Proteins:
Struct. Funct. Genet. 45, 229-236.
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Dr. Mohd. Tashfeen Ashraf |
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Publications |
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• Mohd. Tashfeen Ashraf, Rizwan Hasan Khan. "Effect of metal ions and EGTA on the
optical properties of Concanavalin A at alkaline pH". Protein and Peptide Letters,
2005, 12, 203-206.
• Mohd. Tashfeen Ashraf, Rizwan Hasan Khan. "Mitogenic Lectins"- A review article.
Medical Science Monitor, 2003; 9(11): RA 265-269.
• Aabgeena Naeem, Mohd. Tashfeen Ashraf, Mohd Akram, Rizwan Hasan Khan. "Comparative
study of effects of polyols, salts, and alcohols on trichloroacetic acid-induced
state of Cytochrome C". Biochemistry (Moscow), 2006, Vol. 71, No. 10, pp. 1101-1109.
• Farah Naseem, Basir Ahmad, Mohd. Tashfeen Ashraf and Rizwan Hasan Khan. "Molten
globule-like intermediate of Asialofetuin at acidic pH". Biochemica et Biophysica
Acta 1699 (2004) 191-199.
• Aabgeena Naeem, Ejaz Ahmad, Mohd. Tashfeen Ashraf, Rizwan Hasan Khan. "Purification
and characterization of mannose/glucose-specific lectin from seeds of Trigonella
foenumgraecum". Biochemistry (Moscow), 2007, Vol. 72, No. 1, pp. 44-48.
• Manpreet Kaur, Kuljinder Singh, Pushpinder J. Rup, A.K. Saxena, Rizwan H. Khan,
Mohd. Tashfeen Ashraf, Sukhdev Singh Kamboj, Jatinder Singh. "A tuber lectin from
Arisaema helleborifolium Schott with anti-insect activity against melon fruit fly,
Bactrocera cucurbitae (Coquillett) and anti-cancer effect on human cancer cell lines".
Archives of Biochemistry and Biophysics 445 (2006) 156-165.
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Dr. Rekha Puria |
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Publications |
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• Zurita-Martinez SA*, Puria Rekha*, Pan X, Boeke JD, Cardenas ME. Efficient Tor signaling requires a
functional Class C Vps protein complex in Saccharomyces cerevisiae. Genetics. 2007 Aug; 176(4):
2139-50. (*- equal coauthors)
• a,b Puria Rekha, Zurita-Martinez SA, Cardenas ME. Nuclear translocation of Gln3 in response to
nutrient signals requires Golgi to endosome trafficking in Saccharomyces cerevisiae. Proc Natl Acad
Sci USA. 2008 May; 105: 7194-7199.
a This study was featured on the cover and highlighted by a commentary in the same PNAS issue.
Mitchell AP. A VAST staging area for regulatory proteins. Proc Natl Acad Sci USA. 2008 May; 105:
7111-7112
b It was also highlighted in the editor's choice section of Science Signaling: A.M. VanHook, Route to
Specificity. Sci. Signal. 1, ec199 (2008).
• Puria Rekha, Cardenas ME. Rapamycin bypasses vesicle-mediated signaling events to activate
Gln3 in Saccharomyces cerevisiae. Communicative and integrative biology. July/aug/Sept 2008
• Rohde JR, Bastidas R, Puria Rekha, Cardenas ME. Nutritional control via Tor signaling in
Saccharomyces cerevisiae. Current Opinion in Microbiology, 2008, April; 11: 153-160.
• Helena Morales-Johansson, Rekha Puria, David L. Brautigan, and Maria E. Cardenas. Human
protein phospatase PP6 regulatory subunits provide Sit4-dependent and rapamycin sensitive Sap
function in Saccharomyces cerevisiae. Plos One, 2009 Jul 21: 4(7), e6331.
• Puria Rekha*, Mannan A*, Chopra R* and Ganesan, K. Critical role of RPI1 in stress tolerance of
yeast during ethanolic fermentation. FEMs Yeast Res., 2009, Dec; 9(8):1161-71 (*- equal coauthors).
• Rekha Puria, Rohini Chopra, Ganesan K. (2009) “Methods for identifying genes that increase
yeast stress tolerance, and use of these genes for yeast strain improvement. European patent No.
EP1910536.
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Dr. Siya Ram |
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Publications |
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• Jyoti, A.; Ram, S.; Vajpayee, P.; Singh, G.; Dwivedi, P.; Jain, S.K.; Shanker,
R. Contamination of surface and potable water in south Asia by salmonellae: Culture-independent
quantification with Molecular Beacon real-time PCR. Sci. Total. Environ. 2009 (In
Press).
•Ram, S.; Vajpayee, P.; Shanker, R. Enterotoxigenic Escherichia coli in sewage impacted
waters and aquatic weeds: quantitative PCR for culture–independent enumeration.
J. Appl. Microbiol. 2009, (doi: 10.1111/j.1365-2672.2009.04501.x). PMID: 19735327
• Lata, P.; Ram, S.; Agarwal, M.; Shanker, R. Enterococci in river Ganga surface
waters: Propensity of species distribution, dissemination of antimicrobial-resistance
and virulence-markers among species along landscape".BMC Microbiol. 2009, 9:140
(doi: 10.1186/1471-2180-9-140). PMID: 19615089
• Lata, P.; Ram, S.; Agarwal, M.; Shanker, R. Real-time PCR for rapid detection
of vanA gene in surface waters and aquatic macrophyte by molecular beacon probe.
Environ. Sci. Technol. 2009, 43, 3343-3348. PMID: 19534156
• Ram, S.; Vajpayee, P.; Singh, R. L.; Shanker, R. Surface water of a perennial
river exhibits multi-antimicrobial resistant shiga-toxin and enterotoxin producing
Escherichia coli. Ecotoxicol. Environ. Saf. 2008, 72, 490 - 495. PMID: 18692897
• Ram, S.; Vajpayee, P.; Tripathi, U.; Singh, R.L.; Seth, P. K., Shanker, R. Determination
of antimicrobials resistance and virulence gene signatures in surface water isolates
of Escherichia coli. J. Appl. Microbiol. 2008, 105, 1899 - 1908. PMID: 18713280
• Ram, S.; Singh, R. L.; Shanker, R. In-silico comparison of real-time PCR probes
for detection of pathogens. In- Silico Biol. 2008, 8, 251 - 259. PMID: 19032160
• Ram, S.; Vajpayee, P.; Shanker, R. Rapid culture independent quantitative detection
of enterotoxigenic Escherichia coli in surface waters by real - time PCR with molecular
beacon. Environ. Sci. Technol. 2008, 42, 4577- 4582. PMID: 18605589
• Ram, S.; Vajpayee, P.; Shanker, Contamination of potable water distribution systems
by multi-antimicrobial resistant enterohemorrhagic Escherichia coli. Environ. Health
Perspect. 2008, 116, 448 - 452. PMID: 18414625
• Ram, S.; Vajpayee, P.; Shanker, R. Prevalence of multi antimicrobial agent resistant,
shiga toxin and enterotoxin producing Escherichia coli in surface waters of river
Ganga. Environ. Sci. Technol. 2007, 41, 7383 - 7388. PMID: 18044515
• Ram, S.; Vajpayee, P.; Singh, R. L.; Shanker, R. Virulence determinants of shiga
toxin and enterotoxin producing E. coli exhibit distinct pattern in three perennial
Indian rivers. Adv. Life. Sci. 2007, 1, 1 - 8. PMID: NA
• Ram, S.; Shanker, R. Computing TaqMan probe for multiplex PCR detection of E.
coli O157 serotype in water. In-Silico Biol. 2005, 5, 499 - 504. PMID: 16268792
• Ram, S.; Shanker, R. Plasmid and drug resistance profile of sorbitol non-fermenting
cefixime - tellurite resistance Escherichia coli isolates from the river Gomti.
Bull. Environ. Contam. Toxicol. 2005, 75, 623 - 628. PMID: 16400540
• Ram, S.; Vajpayee, P.; Singh, R. L.; Shanker, R. Molecular beacon based detection
and quantitative enumeration of enterohemorrhagic Escherichia coli from surface
and potable waters. Environ. Microbiol. 2008 (Revised Submitted).
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Dr. Vikrant Nain |
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Publications |
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• Vikrant Nain, Rajani Jaiswal, Monika Dalal, Bandarupalli Ramesh and Polumetla
A. Kumar (2005) Polymerase chain reaction analysis of transgenic plants contaminated
by Agrobacterium. Plant Molecular Biology Reporter 23: 59-65.
• Rajani Jaiswal, Vikrant Nain, M.Z. Abdin and P.A. Kumar (2007). Isolation of pigeonpea
(Cajanus cajan L.) legumin gene promoter and identification of conserved regulatory
elements by Phylogenetic Footprinting. Indian J. Biotechnology 6:495-503
• Vikrant Nain, Anju Verma, Neeraj Kumar, Priyanka Sharma and P. A. Kumar. (2008).
Isolation of an ovule specific promoter from Arabidopsis thaliana. Indian J. Experimental
Biology 46:207-211.
• N. Saraswathy, Vikrant Nain and P. Ananda Kumar (2008) Construction of Bt-cry1Ac
and vip fusion gene effective against Helicoverpa armigera, Spodoptera litura and
Plutella xylostella. Indian J. Biotechnology 7:204-209.
• Anju Verma, Vikrant Nain, and P. A. Kumar (2008). Differential response of Agrobacterium
tumefaciens Attachment to Sorghum bicolor (L) Moench tissues: Influence of Acetosyringone
in host recognition and binding. Physiol Mol Biol Plant 14: 307-313.
• Haiying Liang, P. Ananda Kumar, Vikrant Nain, William A. Powell, and John E. Carlson
(2009). Selection and screening strategies. In: Kole C, Michler CH, Abbott AG, Hall
TC (eds) Transgenic Crop Plants. Vol 1: Principles and Development. Springer-verlag,
Heidelberg, Berlin, New York, pp 85-143.
• Priyanka Sharma*, Vikrant Nain*, Suman Lakhanpaul and P. A. Kumar (2010). Synergistic activity between
Bacillus thuringiensis Cry1Ab and Cry1Ac toxins against maize stem borer (Chilo partellus Swinhoe). Letters
in Applied Microbiology (In Press)
*joint first authors
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Dr. Jitendra Singh |
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Publications |
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• N. Banerjee1, Jitendra Singh1, P. Singh1, S. Forst2, D. Park2 (1Insect Resistance Group,
International Centre for Genetic Engineering and Biotechnology, New Delhi, India, 2Department
of Biological Sciences, University of Wisconsin, Milwaukee, WI) “Xenocin Export in Xenorhabdus
nematophila”. Abstract accepted for 49th annual meeting of American Society for Cell Biology at
San Diego, CA December 5-9, 2009
• Jitendra Singh., Banerjee N, and Bhatnagar R. "Secretion studies of xenocin operon from Xenorhabdus
nematophila” Abstract accepted for 109th General meeting of American Society for Microbiology (ASM)
at Philadelphia, Pennsylvania, USA May 2009.
• Jitendra Singh and Nirupama Banerjee. Transcriptional analysis and functional characterization
of a gene pair encoding iron regulated xenocin and immunity proteins of Xenorhabdus nematophila
( Journal of bacteriology 2008, 190: p3377-85).
• Jitendra Singh., Banerjee N, and Bhatnagar R." Transcriptional analysis and functional characterization
of a gene pair encoding iron regulated xenocin and immunity proteins of Xenorhabdus nematophila” poster
presented at Annual Conference of American Society for Cell Biology (ASCB) at Washington DC,
USA December 2007.
• Jyotirmoy Banerjee*, Jitendra Singh*, Mohan Chandra Joshi, Shubhendu Ghosh, and Nirupama Banerjee.
The Cytotoxic Fimbrial Structural Subunit of Xenorhabdus nematophila Is a Pore-Forming Toxin.
Journal of Bacteriology. 2006, 7957–7962. (* both authors have equal contribution).
• Jitendra Singh, and Nirupama Banerjee. AAZ06276. Nucleotide sequence submitted in NCBI data base.
Direct submission. 2005. Putative colicin like protein [Xenorhabdus nematophila] gi|70671870|gb|AAZ06276.1|[70671870]
• Jitendra Singh and Nirupama Banerjee. AAZ06277. Nucleotide sequence submitted in NCBI data base. Direct submission. 2005.
Putative hemagglutinin/hemolysin [Xenorhabdusnematophila]gi|120433596|gb|AAZ06277.1|[120433596]
• Jitendra Singh and Nirupama Banerjee. AAZ06278. Nucleotide sequence submitted in NCBI data base.
Direct submission. 2005. Putative cytoplasmic protein [Xenorhabdus nematophila] gi|70671872|gb|AAZ06278.1|[70671872]
• Jitendra Singh, A. K. Shau, and Nirupama Banerjee. ABC24675. Nucleotide sequence submitted in NCBI data base.
Direct submission. 2005. Glycerophosphoryl diester phosphodiesteras precursor [Xenorhabdus nematophila]
• Jitendra Singh, Mohan C. Joshi, R. Bhatnagar. Cloning and expression of glutamine synthetase gene from mycobacterium in E.coli .
(Biochemical and Biophysical Research Communication. 2004, 317: 634-638.)
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Ms. Bhaswati Banerjee |
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Publications |
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• Plasmodium falciparum uses gC1qR/HABP1/p32 as a receptor to binding to vascular endothelium and for platelet-mediated clumping
Authors: A.K. Biswas, A. Hafiz, B. Banerjee, K.S. Kim, K. Datta and C.E. Chitnis Journal: PLoS Pathogens, Vol 3(9), Sep 2007,
Pg 1271-1280
• Golgi localization and dynamics of Hyaluronan Binding Protein 1 (HABP1/p32/C1QBP) during the cell cycle
Authors: A. Sengupta, B. Banerjee, R.K. Tyagi, K. Datta: Journal: Cell Research, Vol 15(3), Mar 2005, Pg 183-186
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Dr.Vishwas Tripathi |
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Publications |
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• Vishwas Tripathi, Romsha Verma,Amit Dinda, Neena Malhotra, Jagdeep Kaur Kalpana Luthra, Differential Expression
of RDC1/CXCR7 in the Human Placenta, J Clin Immunol. 2009 May; 29 (3):379-86. (First report)
• Baweja RB, Zaman MS, Mattoo AR, Sharma K, Tripathi Vishwas, Aggarwal A, Dubey GP, Kurupati RK, Ganguli M, Chaudhury NK, Sen S,
Das TK, Gade WN, Singh Y Properties of Bacillus anthracis spores prepared under various environmental conditions, Arch Microbiol,
(2008) 189:71–79.
• Vishwas Tripathi, Romsha Kumar, Jagdeep Kaur, Kalpana Luthra, RDC1 (A coreceptor of HIV-1) expression in JEG-3 cells.
(Accepted in Int. Jr. of curr. Chem)
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Dr. Savneet Kaur |
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Publications |
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• Savneet Kaur, TR Santhosh Kumar, Akira Uruno, Akira Sugawara, Karunakaran Jayakumar,
Chandrasekharan C Kartha. Genetic engineering with endothelial nitric oxide synthase improves functional
properties of endothelial progenitor cells from patients with coronary artery disease: an in vitro study.
Basic Res Cardiol. 2009;104:739-49.(First report)
• Savneet Kaur, SR Panicker, T James, P Sarma, KR Thankappan, CC Kartha Association of Monocyte Chemoattractant
Protein-1 –2518 Promoter Polymorphism and Serum Levels with Metabolic Syndrome in A South Indian Population.
Metabolic Syndrome and Related disorders, 2009;7:193-8.
• Savneet Kaur, K Jayakumar, CC Kartha. The potential of circulating endothelial progenitor cells to form colonies is
inversely proportional to total vascular risk score in patients with coronary artery disease. Indian Heart J, 2007; 59:
475-481.
• Mudit Vaid, Savneet Kaur, Helen Sambatakou, Taruna Madan, David W Denning, P. Usha Sarma. Distinct alleles of mannose-binding
lectin (MBL) and surfactant proteins A (SP-A) in patients with chronic cavitary pulmonary aspergillosis and allergic bronchopulmonary
aspergillosis. Clin Chem Lab Med, 2007; 45:183-6.
• Savneet Kaur, Vijay Kumar Gupta, Steffen Thiel, P.Usha Sarma, Taruna Madan. Protective role of mannan-binding lectin in a murine model of
invasive pulmonary aspergillosis, Clinical and Experimental Immunology, 2007; 148: 382-9.
• Mudit Vaid, Savneet Kaur, Helen Sambatakou, Taruna Madan, David W Denning, P. Usha Sarma. Association of SP-D, MBL and I-NOS genetic variants with pulmonary
tuberculosis. (Clinical report) Indian Journal of Human Genetics, 2006; 12: 105-10.
• Savneet Kaur, Steffen Thiel, P.Usha Sarma, Taruna Madan. Mannan-binding lectin in asthma and allergy. Curr Allergy Asthma Rep., 2006; 6: 377-83.
• Savneet Kaur, Vijay Kumar Gupta, Ashok Shah, Steffen Thiel, P.Usha Sarma, Taruna Madan. Elevated levels of mannan-binding lectin (MBL) and eosinophilia in patients
of bronchial asthma with allergic rhinitis and allergic bronchopulmonary aspergillosis associate with a novel intronic polymorphism in MBL.
Clinical and Experimental Immunology, 2005; 143: 414-9.
• Savneet Kaur, Vijay Kumar Gupta, Ashok Shah, Steffen Thiel, P.Usha Sarma, Taruna Madan. Plasma MBL Levels and activity are elevated in allergic
patients Journal of Allergy and Clinical Immunology, 2005; 116: 1381-3.
• Taruna Madan, Savneet Kaur, Shweta Saxena, Mamta Singh, Uday Kishore, Steffen Thiel, Kenneth B. M. Reid, P. Usha Sarma. Role of collectins in innate immunity against aspergillosis. Medical Mycology, 2005; 43 Suppl 1: S155-63.
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Dr. Barkha Singhal |
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Publications |
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• A.K. Singh, P. Saxena, S. Mehtab, Barkha Gupta, Strontium(II)-selective electrode based on Macrocyclic Tetraamide, Talanta 2006, 69, 521-526.
• V.K. Gupta, A.K. Singh, S. Mehtab, Barkha Gupta, A cobalt(II)-selective PVC membrane based on a Schiff base complex of
N,N-bis(salicylidene)-3,4-diaminotoluene, Analytica Chimica Acta, 2006, 566, 5-10.
• V.K. Gupta, A.K. Singh, Barkha Gupta, A cerium(III) selective polyvinyl chloride membrane sensor based on a Schiff base complex of N,N_-bis[2- (salicylideneamino)ethyl]ethane-1,2-diamine,
Analytica Chimica Acta, 2006, 575, 198-204.
• A.K. Singh, P. Saxena, Barkha Gupta, S. Mehtab, A selective membrane electrode for Lanthanum (III) ion based on a [Bzo2Me2Pyo2(16)hexaeneN6] as ionophore, Analytical Sciences 2006, 22, 1339-1446.
• V.K. Gupta, A.K. Singh, Barkha Gupta, Schiff bases as cadmium (II) selective ionophores in polymeric membrane electrodes, Analytica Chimica Acta, 2007, 583, 340-348.
• V.K. Gupta, A.K. Singh, Barkha Gupta, Chromium (III) selective membrane sensors based on Schiff bases as chelating ionophores, Analytica Chimica Acta, 2007, 585, 171-178.
• V.K. Gupta, A.K. Singh, Barkha Gupta, Neutral carriers based polymeric membrane electrodes for selective determination of mercury (II), Analytica Chimica Acta, 2007, 590, 81-90.
• V.K. Gupta, A.K. Singh, Barkha Gupta, Potentiometric sensors enabling fast screening of the benign prostatic hyperplasia drug alfuzosin in pharmaceuticals, urine and serum, Combinatorial Chemistry and High-throughput Screening, 2007, 10 560-570.
• V.K. Gupta, A.K. Singh, Barkha Gupta Potentiometric sensor for the high -throughput determination of Tetramisole hydrochloride, Combinatorial Chemistry and High-throughput Screening, 2007, 10,583-594.
• V.K.Gupta, A.K. Singh, Barkha Gupta Development of membrane electrodes for selective determination of some antiepileptic drugs in pharmaceuticals, plasma and urine, Analytical and Bioanalytical Chemistry, 2007,389, 2019-2028.
• V.K. Gupta, A.K. Singh, Barkha Gupta Electroanalytical performance of Terbium(III) selective sensor based on a neutral ionophore in environmental and medicinal samples, Analytical and Bioanalytical Chemistry, 2008, 390, 2171-2181.
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Dr. Imteyaz Qamar |
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Publications |
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• Imteyaz Qamar, Eun-Yeung Gong, Yeawon Kim, Chin-Hee Song, Hyun Joo Lee, Sang-Young Chun, and Keesook Lee Anti-steroidogenic factor ARR19 inhibits testicular steroidogenesis through the suppression of Nur77 transactivation. J Biol Chem. 2010 285(29): 22360-22369.
• Imteyaz Qamar, Eunsook Park, Eun-Yeung Gong, Hyun Joo Lee, and Keesook Lee. Androgen receptor corepressor-19KDA (ARR19), an anti-steroidogenic factor, is regulated by gata-1 in testicular leydig cells. J Biol Chem. 2009 284(27): 18021-18032.
• Arun Kumar, Manjunath G. Basavaraj, Santosh K. Gupta, Imteyaz Qamar et al.: 2007. Role of CYP1B1, MYOC, OPTN and OPTC Genes in Adult-onset Primary Open-angle Glaucoma: Predominance of CYP1B1 Mutations in Indian Patients”. Molecular Vision 2007; 13:667-676.
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Dr. Sachin Teotia |
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Publications |
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• Sachin Teotia and Rebecca S. Lamb. The paralogous genes RADICAL-INDUCED CELL DEATH 1 and SIMILAR TO RCD ONE1 play partially redundant functions during Arabidopsis thaliana development; Plant Physiology, Sept. 2009, 151 (1): 180-198.
• Sachin Teotia, Sivaramakrishnan Muthuswamy, Rebecca S. Lamb. RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 and the stress-induced morphogenetic response; Plant Signaling and Behavior, Feb. 2010, 5 (2): 143-145.
• Matteo Citarelli, Sachin Teotia, Rebecca S. Lamb. Evolutionary history of the poly(ADP-ribose) polymerase gene family in eukaryotes; BMC Evolutionary Biology, Oct. 2010, 10:308.
• Sachin Teotia and Rebecca S. Lamb. RCD1 and SRO1 are necessary to maintain meristematic fate in Arabidopsis thaliana; Journal of Experimental Botany, Jan. 2011, 62(3):1271-84.
• Rebecca S. Lamb, Matteo Citarelli, Sachin Teotia. Functions of the poly(ADP-ribose) polymerase superfamily in plants; Cellular and Molecular Life Sciences, in press, PMID:21861184.
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Dr. Deepali Singh |
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Publications |
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• Cheryl Bolinger, Amit Sharma, Deepali Singh and Kathleen Boris-Lawrie. RNA Helicase A modulates HIV-1 translation and infectivity. Nucleic Acids Research (2010) Mar 1; 38(5):1686-96.
• Rajam M.V, Chandola N, P SaiPrasad Goud, Singh Deepali, Kashyap V, Choudhary M. L, Sihachakr D. Thaumatin sweet protein gene confers tolerance to fungal pathogens as well as abiotic stresses in transgenic tobacco plants. Biol. Plant (2007) Vol 51, 135-141.
• Deepali Singh, and Kathleen Boris-Lawrie. Redundant 5’UTR elements in SNV modulate balanced expression and are necessary for polysome association of unspliced RNA. Under revision in Journal of Virology.
• Deepali Singh, Wen-Yi Chen, Lien B. Lai, Michael Stiffler, Hue D. Lai, Venkat Gopalan. Comparison of substrate recognition determinants of RNAse P across three domains of life. Under revision in Nucleic Acids Research.
• Julia Marcela Hernandez, Deepali Singh, Cheryl Bolinger, Ralf Bundschuh, and Kathleen Boris-Lawrie. Intersection of genome-wide analyses deciphers the genetic signature for noncoding RNA structural features in DHX9/RNA helicase A translation targets. (Communicated to RNA)
Books
• Book Chapter “SACCHAROMYCES BOULARDII-THE YEAST PROBIOTIC”. In book entitled “Microbes in the service of mankind: tiny bugs with huge impact”. Eds Nagpal, Kumar, Singh by I K International Publishing House Pvt. Ltd., New Delhi. (Book under publication)
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